3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
6WDF|1|1|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDF_009 not in the Motif Atlas
Homologous match to HL_5J7L_142
Geometric discrepancy: 0.1573
The information below is about HL_5J7L_142
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

6WDF|1|1|C|305
6WDF|1|1|U|306
6WDF|1|1|G|307
6WDF|1|1|G|308
6WDF|1|1|A|309
6WDF|1|1|A|310
6WDF|1|1|A|311
6WDF|1|1|G|312

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain u
50S ribosomal protein L24

Coloring options:


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