HL_6WDF_042

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6WDF|1|1|U|1729, 6WDF|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDF_042 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3857

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6WDF|1|1|C|1727
6WDF|1|1|C|1728
6WDF|1|1|U|1729
6WDF|1|1|C|1730
6WDF|1|1|G|1731
6WDF|1|1|C|1732
6WDF|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains