HL_6WDF_106
3D structure
- PDB id
- 6WDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6WDF|1|7|U|16, 6WDF|1|7|C|17, 6WDF|1|7|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDF_106 not in the Motif Atlas
- Homologous match to HL_4WJ4_001
- Geometric discrepancy: 0.3302
- The information below is about HL_4WJ4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_66853.7
- Basepair signature
- cWW-cWS-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
6WDF|1|7|C|13
6WDF|1|7|A|14
6WDF|1|7|G|15
6WDF|1|7|U|16
6WDF|1|7|C|17
6WDF|1|7|G|18
6WDF|1|7|G|19
6WDF|1|7|U|20
6WDF|1|7|A|21
6WDF|1|7|G|22
Current chains
- Chain 7
- tRNAPhe
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: