HL_6WDG_102
3D structure
- PDB id
- 6WDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6WDG|1|5|C|16, 6WDG|1|5|C|17, 6WDG|1|5|U|17|||A, 6WDG|1|5|G|18, 6WDG|1|5|G|19, 6WDG|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDG_102 not in the Motif Atlas
- Homologous match to HL_3WFS_001
- Geometric discrepancy: 0.2337
- The information below is about HL_3WFS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WDG|1|5|C|13
6WDG|1|5|A|14
6WDG|1|5|G|15
6WDG|1|5|C|16
6WDG|1|5|C|17
6WDG|1|5|U|17|||A
6WDG|1|5|G|18
6WDG|1|5|G|19
6WDG|1|5|U|20
6WDG|1|5|A|21
6WDG|1|5|G|22
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 50S ribosomal protein L1
Coloring options: