HL_6WDJ_006

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6WDJ|1|1|A|196, 6WDJ|1|1|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDJ_006 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.175

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WDJ|1|1|G|194
6WDJ|1|1|A|195
6WDJ|1|1|A|196
6WDJ|1|1|A|197
6WDJ|1|1|C|198
6WDJ|1|1|A|199
6WDJ|1|1|U|200
6WDJ|1|1|C|201

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain l

50S ribosomal protein L15

Chain x

50S ribosomal protein L28