HL_6WDJ_034

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6WDJ|1|1|U|1396, 6WDJ|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDJ_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1932

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6WDJ|1|1|G|1389
6WDJ|1|1|U|1390
6WDJ|1|1|U|1391
6WDJ|1|1|A|1392
6WDJ|1|1|A|1393
6WDJ|1|1|U|1394
6WDJ|1|1|A|1395
6WDJ|1|1|U|1396
6WDJ|1|1|U|1397
6WDJ|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23