HL_6WDJ_099

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDJ_099 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.158

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6WDJ|1|3|C|1314
6WDJ|1|3|U|1315
6WDJ|1|3|G|1316
6WDJ|1|3|C|1317
6WDJ|1|3|A|1318
6WDJ|1|3|A|1319
6WDJ|1|3|C|1320
6WDJ|1|3|U|1321
6WDJ|1|3|C|1322
6WDJ|1|3|G|1323

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain S

30S ribosomal protein S14

Chain X

30S ribosomal protein S19