HL_6WDJ_110

3D structure

PDB id

6WDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDJ_110 not in the Motif Atlas

Homologous match to HL_4YCO_002

Geometric discrepancy: 0.2596

The information below is about HL_4YCO_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.5

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

50

Unit IDs

6WDJ|1|7|A|31
6WDJ|1|7|U|32
6WDJ|1|7|U|33
6WDJ|1|7|G|34
6WDJ|1|7|A|35
6WDJ|1|7|A|36
6WDJ|1|7|A|37
6WDJ|1|7|A|38
6WDJ|1|7|U|39

Current chains

Chain 7

tRNAPhe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 4

mRNA