HL_6WDK_009

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6WDK|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDK_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1767

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6WDK|1|1|C|305
6WDK|1|1|U|306
6WDK|1|1|G|307
6WDK|1|1|G|308
6WDK|1|1|A|309
6WDK|1|1|A|310
6WDK|1|1|A|311
6WDK|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L24