HL_6WDK_082

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6WDK|1|3|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDK_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.178

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6WDK|1|3|G|462
6WDK|1|3|U|463
6WDK|1|3|U|464
6WDK|1|3|A|465
6WDK|1|3|A|466
6WDK|1|3|U|467
6WDK|1|3|A|468
6WDK|1|3|C|469
6WDK|1|3|C|470

Current chains

Chain 3

16S ribosomal RNA

Nearby chains