HL_6WDM_075

3D structure

PDB id

6WDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

6WDM|1|3|U|209, 6WDM|1|3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDM_075 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3813

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6WDM|1|3|C|206
6WDM|1|3|C|207
6WDM|1|3|U|208
6WDM|1|3|U|209
6WDM|1|3|C|210
6WDM|1|3|G|211
6WDM|1|3|G|212
6WDM|1|3|G|213

Current chains

Chain 3

16S ribosomal RNA

Nearby chains