HL_6WDR_004

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6WDR|1|2|U|457

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_004 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.3994

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6WDR|1|2|C|453
6WDR|1|2|C|454
6WDR|1|2|U|455
6WDR|1|2|U|456
6WDR|1|2|U|457
6WDR|1|2|G|458

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8-A