HL_6WDR_013

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1379

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6WDR|1|2|A|783
6WDR|1|2|A|784
6WDR|1|2|U|785
6WDR|1|2|G|786
6WDR|1|2|U|787
6WDR|1|2|A|788
6WDR|1|2|A|789
6WDR|1|2|A|790
6WDR|1|2|U|791
6WDR|1|2|A|792
6WDR|1|2|C|793
6WDR|1|2|C|794
6WDR|1|2|U|795

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A

Chain k

Ribosome biogenesis protein TSR1