HL_6WDR_015

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCCGGUCGGAUUUCC

Length

16 nucleotides

Bulged bases

6WDR|1|2|C|921, 6WDR|1|2|G|923

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|G|914
6WDR|1|2|G|915
6WDR|1|2|C|916
6WDR|1|2|C|917
6WDR|1|2|G|918
6WDR|1|2|G|919
6WDR|1|2|U|920
6WDR|1|2|C|921
6WDR|1|2|G|922
6WDR|1|2|G|923
6WDR|1|2|A|924
6WDR|1|2|U|925
6WDR|1|2|U|926
6WDR|1|2|U|927
6WDR|1|2|C|928
6WDR|1|2|C|929

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A