HL_6WDR_018

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

6WDR|1|2|U|1025, 6WDR|1|2|U|1027, 6WDR|1|2|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_018 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.3764

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6WDR|1|2|C|1023
6WDR|1|2|G|1024
6WDR|1|2|U|1025
6WDR|1|2|A|1026
6WDR|1|2|U|1027
6WDR|1|2|U|1028
6WDR|1|2|G|1029

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain Y

40S ribosomal protein S24-A