HL_6WDR_025

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUUG

Length

40 nucleotides

Bulged bases

6WDR|1|2|G|1380, 6WDR|1|2|C|1398

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|C|1374
6WDR|1|2|A|1375
6WDR|1|2|A|1376
6WDR|1|2|U|1377
6WDR|1|2|A|1378
6WDR|1|2|A|1379
6WDR|1|2|G|1380
6WDR|1|2|G|1381
6WDR|1|2|A|1382
6WDR|1|2|U|1383
6WDR|1|2|U|1384
6WDR|1|2|G|1385
6WDR|1|2|A|1386
6WDR|1|2|C|1387
6WDR|1|2|A|1388
6WDR|1|2|G|1389
6WDR|1|2|A|1390
6WDR|1|2|U|1391
6WDR|1|2|U|1392
6WDR|1|2|G|1393
6WDR|1|2|A|1394
6WDR|1|2|G|1395
6WDR|1|2|A|1396
6WDR|1|2|G|1397
6WDR|1|2|C|1398
6WDR|1|2|U|1399
6WDR|1|2|C|1400
6WDR|1|2|U|1401
6WDR|1|2|U|1402
6WDR|1|2|U|1403
6WDR|1|2|C|1404
6WDR|1|2|U|1405
6WDR|1|2|U|1406
6WDR|1|2|G|1407
6WDR|1|2|A|1408
6WDR|1|2|U|1409
6WDR|1|2|U|1410
6WDR|1|2|U|1411
6WDR|1|2|U|1412
6WDR|1|2|G|1413

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10-A

Chain M

40S ribosomal protein S12

Chain P

40S ribosomal protein S15

Chain f

Ubiquitin-40S ribosomal protein S31