HL_6WDR_031

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUUGUAAUUAUUG

Length

14 nucleotides

Bulged bases

6WDR|1|2|A|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|C|1701
6WDR|1|2|A|1702
6WDR|1|2|U|1703
6WDR|1|2|U|1704
6WDR|1|2|G|1705
6WDR|1|2|U|1706
6WDR|1|2|A|1707
6WDR|1|2|A|1708
6WDR|1|2|U|1709
6WDR|1|2|U|1710
6WDR|1|2|A|1711
6WDR|1|2|U|1712
6WDR|1|2|U|1713
6WDR|1|2|G|1714

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A