HL_6WDR_032

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCAAGUCAUCAGCUUGCG

Length

19 nucleotides

Bulged bases

6WDR|1|2|G|1753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|C|1741
6WDR|1|2|G|1742
6WDR|1|2|C|1743
6WDR|1|2|A|1744
6WDR|1|2|A|1745
6WDR|1|2|G|1746
6WDR|1|2|U|1747
6WDR|1|2|C|1748
6WDR|1|2|A|1749
6WDR|1|2|U|1750
6WDR|1|2|C|1751
6WDR|1|2|A|1752
6WDR|1|2|G|1753
6WDR|1|2|C|1754
6WDR|1|2|U|1755
6WDR|1|2|U|1756
6WDR|1|2|G|1757
6WDR|1|2|C|1758
6WDR|1|2|G|1759

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain T

40S ribosomal protein S19-A

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29-A