HL_6WDR_035

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCUGAGAAACGGC

Length

14 nucleotides

Bulged bases

6WDR|1|2|C|665, 6WDR|1|2|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|G|655
6WDR|1|2|C|656
6WDR|1|2|C|657
6WDR|1|2|U|658
6WDR|1|2|G|659
6WDR|1|2|A|660
6WDR|1|2|G|661
6WDR|1|2|A|662
6WDR|1|2|A|663
6WDR|1|2|A|664
6WDR|1|2|C|665
6WDR|1|2|G|666
6WDR|1|2|G|667
6WDR|1|2|C|668

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A

Chain Y

40S ribosomal protein S24-A