HL_6WDR_043

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUGCCAGCAGCCGCGGUAAUUCC

Length

24 nucleotides

Bulged bases

6WDR|1|2|U|826, 6WDR|1|2|G|827, 6WDR|1|2|C|828, 6WDR|1|2|C|829, 6WDR|1|2|A|830, 6WDR|1|2|A|833, 6WDR|1|2|G|834, 6WDR|1|2|U|841, 6WDR|1|2|A|842, 6WDR|1|2|U|844, 6WDR|1|2|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|G|824
6WDR|1|2|G|825
6WDR|1|2|U|826
6WDR|1|2|G|827
6WDR|1|2|C|828
6WDR|1|2|C|829
6WDR|1|2|A|830
6WDR|1|2|G|831
6WDR|1|2|C|832
6WDR|1|2|A|833
6WDR|1|2|G|834
6WDR|1|2|C|835
6WDR|1|2|C|836
6WDR|1|2|G|837
6WDR|1|2|C|838
6WDR|1|2|G|839
6WDR|1|2|G|840
6WDR|1|2|U|841
6WDR|1|2|A|842
6WDR|1|2|A|843
6WDR|1|2|U|844
6WDR|1|2|U|845
6WDR|1|2|C|846
6WDR|1|2|C|847

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23-A