HL_6WJR_001

3D structure

PDB id

6WJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo structure of the FMN riboswitch aptamer domain in the presence of sulfate

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAAAUUC

Length

9 nucleotides

Bulged bases

6WJR|1|X|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WJR_001 not in the Motif Atlas

Homologous match to HL_3F2X_001

Geometric discrepancy: 0.1134

The information below is about HL_3F2X_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6WJR|1|X|G|17
6WJR|1|X|U|18
6WJR|1|X|G|19
6WJR|1|X|A|20
6WJR|1|X|A|21
6WJR|1|X|A|22
6WJR|1|X|U|23
6WJR|1|X|U|24
6WJR|1|X|C|25

Current chains

Chain X

RNA (112-MER)

Nearby chains