HL_6WJS_005

3D structure

PDB id

6WJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo structure of the FMN riboswitch aptamer domain in the presence of phosphate

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUAGAGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WJS_005 not in the Motif Atlas

Homologous match to HL_3F2X_005

Geometric discrepancy: 0.1627

The information below is about HL_3F2X_005

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

6WJS|1|X|G|88
6WJS|1|X|U|89
6WJS|1|X|A|90
6WJS|1|X|G|91
6WJS|1|X|A|92
6WJS|1|X|G|93
6WJS|1|X|U|94
6WJS|1|X|C|95

Current chains

Chain X

RNA (112-MER)

Nearby chains