HL_6WLT_058

3D structure

PDB id

6WLT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AUAUAUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WLT_058 not in the Motif Atlas

Geometric match to HL_9AXU_059

Geometric discrepancy: 0.3682

The information below is about HL_9AXU_059

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

6WLT|12|A|A|99
6WLT|12|A|U|100
6WLT|12|A|A|101
6WLT|12|A|U|102
6WLT|12|A|A|103
6WLT|12|A|U|104
6WLT|12|A|U|105

Current chains

Chain A

RNA (231-MER)

Nearby chains