HL_6WNV_008

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1224

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6WNV|1|3|A|320
6WNV|1|3|A|321
6WNV|1|3|C|322
6WNV|1|3|U|323
6WNV|1|3|G|324
6WNV|1|3|A|325
6WNV|1|3|G|326
6WNV|1|3|A|327
6WNV|1|3|C|328
6WNV|1|3|A|329
6WNV|1|3|C|330
6WNV|1|3|G|331
6WNV|1|3|G|332
6WNV|1|3|U|333

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain Y

30S ribosomal protein S20