HL_6WNV_033
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WNV_033 not in the Motif Atlas
- Geometric match to HL_5J7L_135
- Geometric discrepancy: 0.1351
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6WNV|1|4|U|87
6WNV|1|4|G|88
6WNV|1|4|A|89
6WNV|1|4|U|90
6WNV|1|4|A|91
6WNV|1|4|U|92
6WNV|1|4|G|93
6WNV|1|4|A|94
6WNV|1|4|A|95
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain t
- 50S ribosomal protein L23
- Chain u
- 50S ribosomal protein L24
- Chain y
- 50S ribosomal protein L29
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