HL_6WNV_040
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGGAAAG
- Length
- 8 nucleotides
- Bulged bases
- 6WNV|1|4|A|311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WNV_040 not in the Motif Atlas
- Geometric match to HL_5J7L_142
- Geometric discrepancy: 0.1139
- The information below is about HL_5J7L_142
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
6WNV|1|4|C|305
6WNV|1|4|U|306
6WNV|1|4|G|307
6WNV|1|4|G|308
6WNV|1|4|A|309
6WNV|1|4|A|310
6WNV|1|4|A|311
6WNV|1|4|G|312
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain u
- 50S ribosomal protein L24
Coloring options: