3D structure

PDB id
6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AUUCGGU
Length
7 nucleotides
Bulged bases
6WNV|1|4|U|1063
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WNV_058 not in the Motif Atlas
Geometric match to HL_2ZNI_001
Geometric discrepancy: 0.2216
The information below is about HL_2ZNI_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.7
Basepair signature
cWW-F
Number of instances in this motif group
22

Unit IDs

6WNV|1|4|A|1061
6WNV|1|4|U|1062
6WNV|1|4|U|1063
6WNV|1|4|C|1064
6WNV|1|4|G|1065
6WNV|1|4|G|1066
6WNV|1|4|U|1067

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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