HL_6WNV_059

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

6WNV|1|4|G|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_059 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1976

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6WNV|1|4|C|1104
6WNV|1|4|A|1105
6WNV|1|4|U|1106
6WNV|1|4|G|1107
6WNV|1|4|C|1108
6WNV|1|4|C|1109
6WNV|1|4|G|1110

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L31

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18