HL_6WNV_062

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

6WNV|1|4|U|1302, 6WNV|1|4|A|1303

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_062 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3717

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6WNV|1|4|G|1299
6WNV|1|4|C|1300
6WNV|1|4|U|1301
6WNV|1|4|U|1302
6WNV|1|4|A|1303
6WNV|1|4|U|1304
6WNV|1|4|G|1305
6WNV|1|4|C|1306

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15