HL_6WNV_067

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6WNV|1|4|U|1524, 6WNV|1|4|U|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_067 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.1106

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|G|1517
6WNV|1|4|U|1518
6WNV|1|4|U|1519
6WNV|1|4|A|1520
6WNV|1|4|A|1521
6WNV|1|4|U|1522
6WNV|1|4|A|1523
6WNV|1|4|U|1524
6WNV|1|4|U|1525
6WNV|1|4|C|1526

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23