HL_6WNV_100

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6WNV|1|4|A|2948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_100 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.084

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6WNV|1|4|G|2947
6WNV|1|4|A|2948
6WNV|1|4|A|2949
6WNV|1|4|G|2950
6WNV|1|4|A|2951
6WNV|1|4|C|2952
6WNV|1|4|G|2953
6WNV|1|4|A|2954
6WNV|1|4|C|2955

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L17