HL_6WNV_103
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 6WNV|1|4|C|1103, 6WNV|1|4|G|1107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WNV_103 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1903
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6WNV|1|4|A|1100
6WNV|1|4|C|1101
6WNV|1|4|C|1102
6WNV|1|4|C|1103
6WNV|1|4|C|1104
6WNV|1|4|A|1105
6WNV|1|4|U|1106
6WNV|1|4|G|1107
6WNV|1|4|C|1108
6WNV|1|4|C|1109
6WNV|1|4|G|1110
6WNV|1|4|A|1111
6WNV|1|4|A|1112
6WNV|1|4|C|1113
6WNV|1|4|U|1114
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L31
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
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