HL_6WNW_041

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6WNW|1|4|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_041 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.1144

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6WNW|1|4|C|305
6WNW|1|4|U|306
6WNW|1|4|G|307
6WNW|1|4|G|308
6WNW|1|4|A|309
6WNW|1|4|A|310
6WNW|1|4|A|311
6WNW|1|4|G|312

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L24