HL_6WNW_044

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6WNW|1|4|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_044 not in the Motif Atlas

Geometric match to HL_5J7L_146

Geometric discrepancy: 0.0782

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WNW|1|4|G|410
6WNW|1|4|G|411
6WNW|1|4|A|412
6WNW|1|4|C|413
6WNW|1|4|C|414
6WNW|1|4|A|415
6WNW|1|4|U|416
6WNW|1|4|C|417

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains