HL_6WNW_066

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

6WNW|1|4|U|1453, 6WNW|1|4|U|1457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_066 not in the Motif Atlas

Geometric match to HL_5J7L_166

Geometric discrepancy: 0.1226

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6WNW|1|4|G|1452
6WNW|1|4|U|1453
6WNW|1|4|U|1454
6WNW|1|4|A|1455
6WNW|1|4|A|1456
6WNW|1|4|U|1457
6WNW|1|4|C|1458

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22