HL_6WNW_069

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6WNW|1|4|A|1581, 6WNW|1|4|C|1582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_069 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.1793

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6WNW|1|4|C|1579
6WNW|1|4|G|1580
6WNW|1|4|A|1581
6WNW|1|4|C|1582
6WNW|1|4|G|1583
6WNW|1|4|G|1584
6WNW|1|4|U|1585
6WNW|1|4|U|1586
6WNW|1|4|G|1587

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17