HL_6WNW_082

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6WNW|1|4|U|2083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_082 not in the Motif Atlas

Geometric match to HL_7RQB_049

Geometric discrepancy: 0.0814

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6WNW|1|4|G|2077
6WNW|1|4|G|2078
6WNW|1|4|U|2079
6WNW|1|4|A|2080
6WNW|1|4|A|2081
6WNW|1|4|G|2082
6WNW|1|4|U|2083
6WNW|1|4|U|2084
6WNW|1|4|C|2085

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain k

50S ribosomal protein L14