HL_6WQN_041

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

6WQN|1|1|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQN_041 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1482

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WQN|1|1|A|1673
6WQN|1|1|U|1674
6WQN|1|1|G|1675
6WQN|1|1|A|1676
6WQN|1|1|G|1677
6WQN|1|1|A|1678
6WQN|1|1|A|1679
6WQN|1|1|U|1680
6WQN|1|1|U|1681

Current chains

Chain 1

23S rRNA

Nearby chains