HL_6WQN_058

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQN_058 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.1013

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6WQN|1|1|C|2401
6WQN|1|1|G|2402
6WQN|1|1|A|2403
6WQN|1|1|A|2404
6WQN|1|1|A|2405
6WQN|1|1|G|2406

Current chains

Chain 1

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L18