HL_6WQN_060

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQN_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2014

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6WQN|1|1|A|2498
6WQN|1|1|G|2499
6WQN|1|1|U|2500
6WQN|1|1|U|2501
6WQN|1|1|C|2502
6WQN|1|1|A|2503
6WQN|1|1|C|2504
6WQN|1|1|A|2505
6WQN|1|1|U|2506

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36