HL_6WRU_033

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

6WRU|1|1|C|1362, 6WRU|1|1|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WRU_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0837

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

6WRU|1|1|G|1361
6WRU|1|1|C|1362
6WRU|1|1|U|1363
6WRU|1|1|C|1364
6WRU|1|1|G|1365
6WRU|1|1|U|1366
6WRU|1|1|C|1367

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L22

Chain Z

50S ribosomal protein L17