HL_6WRU_056

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WRU_056 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1168

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6WRU|1|1|U|2351
6WRU|1|1|G|2352
6WRU|1|1|U|2353
6WRU|1|1|A|2354
6WRU|1|1|A|2355
6WRU|1|1|A|2356
6WRU|1|1|G|2357
6WRU|1|1|G|2358

Current chains

Chain 1

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L27

Chain Y

50S ribosomal protein L16