HL_6WYV_069

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

6WYV|1|J|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WYV_069 not in the Motif Atlas

Geometric match to HL_5J7L_203

Geometric discrepancy: 0.1253

The information below is about HL_5J7L_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6WYV|1|J|C|38
6WYV|1|J|A|39
6WYV|1|J|U|40
6WYV|1|J|G|41
6WYV|1|J|C|42
6WYV|1|J|C|43
6WYV|1|J|G|44

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA