HL_6WYV_079

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

6WYV|1|I|U|2109, 6WYV|1|I|U|2111, 6WYV|1|I|G|2115, 6WYV|1|I|U|2118, 6WYV|1|I|U|2122, 6WYV|1|I|G|2125, 6WYV|1|I|G|2128, 6WYV|1|I|U|2132, 6WYV|1|I|A|2135, 6WYV|1|I|G|2140, 6WYV|1|I|C|2145, 6WYV|1|I|C|2146, 6WYV|1|I|A|2147, 6WYV|1|I|C|2160, 6WYV|1|I|C|2161, 6WYV|1|I|A|2163, 6WYV|1|I|C|2164, 6WYV|1|I|U|2167, 6WYV|1|I|U|2172, 6WYV|1|I|C|2174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WYV|1|I|C|2103
6WYV|1|I|C|2104
6WYV|1|I|U|2105
6WYV|1|I|U|2106
6WYV|1|I|G|2107
6WYV|1|I|A|2108
6WYV|1|I|U|2109
6WYV|1|I|G|2110
6WYV|1|I|U|2111
6WYV|1|I|G|2112
6WYV|1|I|U|2113
6WYV|1|I|A|2114
6WYV|1|I|G|2115
6WYV|1|I|G|2116
6WYV|1|I|A|2117
6WYV|1|I|U|2118
6WYV|1|I|A|2119
6WYV|1|I|G|2120
6WYV|1|I|G|2121
6WYV|1|I|U|2122
6WYV|1|I|G|2123
6WYV|1|I|G|2124
6WYV|1|I|G|2125
6WYV|1|I|A|2126
6WYV|1|I|G|2127
6WYV|1|I|G|2128
6WYV|1|I|C|2129
6WYV|1|I|U|2130
6WYV|1|I|U|2131
6WYV|1|I|U|2132
6WYV|1|I|G|2133
6WYV|1|I|A|2134
6WYV|1|I|A|2135
6WYV|1|I|G|2136
6WYV|1|I|U|2137
6WYV|1|I|G|2138
6WYV|1|I|U|2139
6WYV|1|I|G|2140
6WYV|1|I|G|2141
6WYV|1|I|A|2142
6WYV|1|I|C|2143
6WYV|1|I|G|2144
6WYV|1|I|C|2145
6WYV|1|I|C|2146
6WYV|1|I|A|2147
6WYV|1|I|G|2148
6WYV|1|I|U|2149
6WYV|1|I|C|2150
6WYV|1|I|U|2151
6WYV|1|I|G|2152
6WYV|1|I|C|2153
6WYV|1|I|A|2154
6WYV|1|I|U|2155
6WYV|1|I|G|2156
6WYV|1|I|G|2157
6WYV|1|I|A|2158
6WYV|1|I|G|2159
6WYV|1|I|C|2160
6WYV|1|I|C|2161
6WYV|1|I|G|2162
6WYV|1|I|A|2163
6WYV|1|I|C|2164
6WYV|1|I|C|2165
6WYV|1|I|U|2166
6WYV|1|I|U|2167
6WYV|1|I|G|2168
6WYV|1|I|A|2169
6WYV|1|I|A|2170
6WYV|1|I|A|2171
6WYV|1|I|U|2172
6WYV|1|I|A|2173
6WYV|1|I|C|2174
6WYV|1|I|C|2175
6WYV|1|I|A|2176
6WYV|1|I|C|2177
6WYV|1|I|C|2178
6WYV|1|I|C|2179
6WYV|1|I|U|2180
6WYV|1|I|U|2181
6WYV|1|I|U|2182
6WYV|1|I|A|2183
6WYV|1|I|A|2184
6WYV|1|I|U|2185
6WYV|1|I|G|2186

Current chains

Chain I

23S ribosomal RNA

Nearby chains