HL_6X6T_006
3D structure
- PDB id
- 6X6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6X6T|1|B|C|56, 6X6T|1|B|A|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6X6T_006 not in the Motif Atlas
- Homologous match to HL_5HR6_003
- Geometric discrepancy: 0.3906
- The information below is about HL_5HR6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
6X6T|1|B|G|53
6X6T|1|B|U|54
6X6T|1|B|U|55
6X6T|1|B|C|56
6X6T|1|B|A|57
6X6T|1|B|A|58
6X6T|1|B|A|59
6X6T|1|B|U|60
6X6T|1|B|C|61
Current chains
- Chain B
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L5
Coloring options: