HL_6X6T_062

3D structure

PDB id

6X6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6X6T_062 not in the Motif Atlas

Geometric match to HL_6DTD_001

Geometric discrepancy: 0.2583

The information below is about HL_6DTD_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6X6T|1|a|C|885
6X6T|1|a|A|886
6X6T|1|a|A|887
6X6T|1|a|C|888
6X6T|1|a|C|889
6X6T|1|a|C|890
6X6T|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

30S ribosomal protein S13