HL_6X6T_113
3D structure
- PDB id
- 6X6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 6X6T|1|d|C|35, 6X6T|1|d|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6X6T_113 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1084
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6X6T|1|d|A|34
6X6T|1|d|C|35
6X6T|1|d|C|36
6X6T|1|d|C|37
6X6T|1|d|C|38
6X6T|1|d|A|39
6X6T|1|d|U|40
6X6T|1|d|G|41
6X6T|1|d|C|42
6X6T|1|d|C|43
6X6T|1|d|G|44
6X6T|1|d|A|45
6X6T|1|d|A|46
6X6T|1|d|C|47
6X6T|1|d|U|48
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 50S ribosomal protein L31
- Chain n
- 50S ribosomal protein L5
- Chain x
- 50S ribosomal protein L18
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