HL_6X7F_063

3D structure

PDB id

6X7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCUAACGU

Length

9 nucleotides

Bulged bases

6X7F|1|a|U|958, 6X7F|1|a|C|961

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6X7F_063 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0553

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6X7F|1|a|G|954
6X7F|1|a|G|956
6X7F|1|a|C|957
6X7F|1|a|U|958
6X7F|1|a|A|959
6X7F|1|a|A|960
6X7F|1|a|C|961
6X7F|1|a|G|962
6X7F|1|a|U|963

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

5S ribosomal RNA; 5S rRNA

Chain v

50S ribosomal protein L16