HL_6X9Q_038

3D structure

PDB id

6X9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

6X9Q|1|a|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6X9Q_038 not in the Motif Atlas

Homologous match to HL_5J7L_134

Geometric discrepancy: 0.3436

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6X9Q|1|a|U|59
6X9Q|1|a|G|60
6X9Q|1|a|C|61
6X9Q|1|a|U|62
6X9Q|1|a|A|63
6X9Q|1|a|A|64
6X9Q|1|a|U|65
6X9Q|1|a|C|66
6X9Q|1|a|U|67
6X9Q|1|a|G|68

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain e

50S ribosomal protein L29