HL_6XDQ_034
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XDQ_034 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.0727
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6XDQ|1|D|C|1314
6XDQ|1|D|U|1315
6XDQ|1|D|G|1316
6XDQ|1|D|C|1317
6XDQ|1|D|A|1318
6XDQ|1|D|A|1319
6XDQ|1|D|C|1320
6XDQ|1|D|U|1321
6XDQ|1|D|C|1322
6XDQ|1|D|G|1323
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain S
- 30S ribosomal protein S14
- Chain W
- 30S ribosomal protein S19
- Chain X
- 30S ribosomal protein S13
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